rs36379881 SNP Detail

Summary

• ID
  rs36379881
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38219294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATGAGAA GTCCAAAGCC
  TTGGGAATAA AATTTTCATT TCCTGGGAGG CACACTGGGT TCCCCAGGAG TTGCTGACAA
  TGGGCCTTCA GTCAGATGGC CCTGACTTAG GGAGGCTAAG TCTGGAACTG CTGGAGGCCA
  CCTAGCTGGA GGAGATAACA AGGCCAGAAC AGAGCTGGTT TCCAAAATTC TTTGGTCTCA
  S
  CAATTACAAT GAAACTAGGT TAACAACCAA TCAGAATTGT ACTAATGTTA CTGCGTTGCC
  CCCCTATTGG AGGTTACCTA ATCCTTCTGG AAAATTCTCT TAGCCCTCCA TTAAAGGGGT
  CCATGAGCCC CTCAGGTGGT TGCCGTTTTG ATAAATGGTT GGCCCCTGAA TGCTGGTAAT
  TTCTTCAGTA AACACTCTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51098409	NES14356945	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36379881					SNP	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51098409	NES14356945	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38219294 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	within coordinates
Cpgi5461	CpG island 5461	1286 bp proximal
Riok1	RIO kinase 1	1677 bp upstream
Rr271618	regulatory region 271618	1694 bp distal
Rr281252	regulatory region 281252	706 bp proximal
Tssr119342	transcription start site region 119342	1917 bp upstream
Tssr122123	transcription start site region 122123	1572 bp downstream
Tssr122124	transcription start site region 122124	1607 bp downstream
Tssr122125	transcription start site region 122125	1765 bp downstream
Tssr122126	transcription start site region 122126	1847 bp downstream