rs36381014 SNP Detail

Summary

• ID
  rs36381014
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113285117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTGGGGC ACTGTGCTAG
  TTCGGGAACC AGGGCAGCAA AGCCAGAACG GCAGCGTTCA CCAGGGACCC GGCTTGGAAA
  GTGTTGAGCT TGTTTGTACC TATAATTGGT TTTGTGTTTA AAGGCACAGC AGCAGGTAGG
  AAATAGAAGT GAGTTGGAAT TGAATGTGTA GCTTGGCTGA CTTGCTGTCG ATAGATGGAC
  R
  AGAGCTGCCC ATTCTTGTAG TTAAGCCTCA GGAGAAGGAA GGAAAGGCTG AGAGTTAGTG
  TTTGTCAGGG AGGTTAGGCA GGCCCTGCAT TGGTGGTCCT AGGCACTAGT TCAAACTAGT
  CCTGAGAGAA ATTGGAGCGG TACCAGACTA AGCTGGGCTC CCTGGGGTTT GGTGCCATCT
  GCTGTCTCTA CTCACCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51842514	NES14762348	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36381014					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842514	NES14762348	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113285117 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	within coordinates
Cpgi17838	CpG island 17838	121 bp distal
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	1482 bp upstream
Gm67816	predicted gene, 67816	251 bp upstream
Rr399829	regulatory region 399829	1483 bp downstream
Rr636484	regulatory region 636484	717 bp distal
Rr636485	regulatory region 636485	262 bp distal
Rr636486	regulatory region 636486	within coordinates
Rr636487	regulatory region 636487	169 bp proximal
Tssr58189	transcription start site region 58189	1179 bp downstream
Tssr58190	transcription start site region 58190	926 bp downstream
Tssr58191	transcription start site region 58191	910 bp downstream
Tssr58192	transcription start site region 58192	295 bp downstream
Tssr58193	transcription start site region 58193	271 bp downstream
Tssr62434	transcription start site region 62434	370 bp upstream