rs36382507 SNP Detail

Summary

• ID
  rs36382507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:113657460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCGGCA CTCAGGTGAC
  AGCCCTGAGT TAGACAGAGC ATGTTTCTGT GGTAGCATAA CGCACACCCA CTCTCTCATC
  CTCTCTAGGA CTCTAGTTAT TTCATTCTGG GCAGAGGGTC ACAGAGGCCA CAGTGGCCAG
  AAAAGAACTA AAGGATTAAG GGCTGACACA ACCAGGACCC ACGGCTTTGG AGATGCAGCC
  Y
  CAGGTTTATT GACCCTTTTC TGGCTAGTGT GGATGTTCTC TGGAGCTGAG TGTCCCCAGG
  TAACCAGGAG CCATGGACAA AGACTCTCCC AATCCCTGCT GGAAAGGTTC AAAGTGACCA
  GGCCCTCTTC CTGCTTCACC ATCCCAGGCC CCAGCTGCAG TTGCCATCGG CCACATCCAC
  AGGCACCCAG ATTCTGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss51794418	NES14722592	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C		T	C	T
ss321649792	CHEV_5_113938614	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs36382507					SNP	C	C	C	C	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794418	NES14722592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:113657460 () rs orientation: forward

Symbol	Name	Function Class
Tssr48022	transcription start site region 48022	1245 bp upstream
Tssr48023	transcription start site region 48023	1305 bp upstream
Wscd2	WSC domain containing 2	within coordinates