rs36382954 SNP Detail

Summary

• ID
  rs36382954
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65507901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGTTGTAA GATGAAATGC ATGCTTCTTT TCTCCCCACA
  TTGCTTCTGA GTCATGTTTT ATTACAGCAA TGGAAACCCT AACTGACACA CTAGACCAGG
  S
  TCCTACCACT TAGCTACAAC CCAAGCCCAC TGGAAATTTT GCTTAACAGT GATTAAACCT
  GGCCTGAAAG AACAAGGTAG ATTTTTTTTA AACCAATGTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50444172	NES13447372	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36382954					SNP	C	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50444172	NES13447372	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65507901 () rs orientation: forward

Symbol	Name	Function Class
Alpk2	alpha-kinase 2	within coordinates
Tssr151596	transcription start site region 151596	840 bp upstream
Tssr153695	transcription start site region 153695	571 bp downstream