rs36383903 SNP Detail

Summary

• ID
  rs36383903
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123130384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCATGCT CCAGGCTCTT
  AAGAGCTTAC AGGGGCTTTG AACAAAGTCC TTCCTATTGC CATCTCTTTA AATCTTTGCT
  ATCTCATAGC TAAGGTTCAG AGAAATGCTA AGCTATTTGA CCACAACAAA ATTATGACTA
  CATGATTTGA ACCAAGAACT TGGGAGAAAT CTGGAGCCCA CAAGTCTGGC CGCTCTGTAA
  S
  CCTGCCTGTG AGACATTTAG AATCCAGCTA CTCATGAGTA CCAAGAACTC ACTCTACTAT
  TGAAATACAC TTAGAGCAAA ATAAATAAAT ACATAAATAA AATCAAAGAT AAACTGGGCA
  TGGTAGTACA TGCCTGGGCA ATATAATGAA ACCATGTCTC AAAAGTAAAA AATTAATGGG
  CTAGTGTTAT GTATGGCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51195098	NES13813299	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36383903					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195098	NES13813299	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123130384 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	846 bp downstream
Rr378570	regulatory region 378570	1752 bp upstream
Tssr48738	transcription start site region 48738	1552 bp downstream
Tssr48739	transcription start site region 48739	1541 bp downstream
Tssr48740	transcription start site region 48740	1496 bp downstream
Tssr48741	transcription start site region 48741	1457 bp downstream
Tssr53176	transcription start site region 53176	1914 bp upstream
Tssr53177	transcription start site region 53177	1858 bp upstream
Tssr53178	transcription start site region 53178	1826 bp upstream
Tssr53179	transcription start site region 53179	1792 bp upstream
Tssr53180	transcription start site region 53180	1748 bp upstream