rs36384153 SNP Detail

Summary

• ID
  rs36384153
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44147471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATCAATAC CACCAAGTAC AAACCTCACA TAGAACAGAA
  CACCCCTTCC CCCAGCCTAG GCCTTGCCCT GCCTCAGCTG CATGCAGGAA ACGTGTACAC
  K
  CTTACAGGAC ATGTACATAC TGTGGTATTT TTGGAGACCT GAATCCTTTC TCATCCTATC
  TCAGTTCACG AAAGACAGGG AGAAAATAGA AAAAAGCCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51891406	NES14911156	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36384153					SNP	G	G	G	G	G	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891406	NES14911156	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44147471 () rs orientation: forward

Symbol	Name	Function Class
4921540A03Rik	RIKEN cDNA 4921540A03 gene	324 bp upstream
Cpgi18969	CpG island 18969	893 bp distal
Cpgi18970	CpG island 18970	1992 bp proximal
Emc10	ER membrane protein complex subunit 10	1518 bp upstream
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Rr380742	regulatory region 380742	within coordinates
Rr646108	regulatory region 646108	1379 bp distal
Rr646109	regulatory region 646109	1113 bp distal
Rr646110	regulatory region 646110	1065 bp distal
Tssr66386	transcription start site region 66386	1460 bp downstream
Tssr66387	transcription start site region 66387	1447 bp downstream
Tssr66388	transcription start site region 66388	1370 bp downstream
Tssr66389	transcription start site region 66389	1343 bp downstream
Tssr66390	transcription start site region 66390	1337 bp downstream
Tssr66391	transcription start site region 66391	794 bp downstream
Tssr72207	transcription start site region 72207	1595 bp upstream