rs36385333 SNP Detail

Summary

• ID
  rs36385333
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143354210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTGGGG TTGCTAACGT
  GTGCTGCAAT CTCTGGTCTT CTTTTCTGTA GTGCTGAAAA TCTAAACTCA TGTCTGCATG
  TTTGCTCAGC AAGCACTTTC CTAAGTGAGC CATCTTCTCA GGACCAATCA GTTTTTTTTT
  TAAAGGCCAC ATATTAATTT CTTGTCTAGG ACACTTTAGT ATGAGTTCCT AGCATGAAAA
  S
  ATACAATTCT GAAAAATGTT AATGCTTATC AAAGTATTAT TCTTCAGTTT TTGTTGGCCT
  TTACTCTCCA ATTTAGTTTA CCAGCAAGAG CCCTGTTATT TTAGGAACCA TGAGAGATCA
  CTAGACACCA ATTTTCTCTC AACTCACATT TATAACTCAT TGACACTAAT GTGAGCTCAG
  GGTGGGGATA TAAAAGTGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51663290	NES14647381	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36385333					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51663290	NES14647381	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143354210 () rs orientation: forward

Symbol	Name	Function Class
D3Mit17	DNA segment, Chr 3, Massachusetts Institute of Technology 17	1027 bp distal
Gm33809	predicted gene, 33809	within coordinates
Gm38006	predicted gene, 38006	within coordinates
Gm42704	predicted gene 42704	1861 bp upstream
Rr398093	regulatory region 398093	1208 bp downstream