rs36385345 SNP Detail

Summary

• ID
  rs36385345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59678227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCTTACC TGTGGAATGG
  ACCAGTGTCC TGAAGATCTT GTCTGTGCTC CGCTGTCTAC AGCCCATGAT AGCCAAATTA
  CTCAGAAATC ACCAGCCACG AAAGTGAGCG CCGCAAGACG GTGGGGGAAA CGCGACTGAG
  AGCCCCGGCC ACCCCCGCTA CTGAGACAGC GGGTTGAGGC GGCCTGGCAC CCCGCGCGCC
  Y
  TGCACTGTCC GCACCAGAGT CTGCAGTCCC GAGGCGGCTT CACCTCAGCG GGGGAGACAT
  CAGCCCCAAG GGAGCTCCAC ACAGTTTCCG CGGCCCCGCG GCGCCGGCCG GAGCGCGCGG
  CCTCCTGATT GGTCGGCGAC TCTCTCGGTT TGTCTCGCGC GGACTGCTAC GGCCAATCGG
  GTTCTCGGCA GCCAAGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51516773	NES14634619	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36385345					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516773	NES14634619	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59678227 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	173 bp upstream
Cpgi6560	CpG island 6560	within coordinates
Gm45935	predicted gene, 45935	within coordinates
Rr404137	regulatory region 404137	within coordinates
Rr493048	regulatory region 493048	1870 bp distal
Rr493049	regulatory region 493049	within coordinates
Rr493050	regulatory region 493050	87 bp proximal
Rr493051	regulatory region 493051	214 bp proximal
Setdb2	SET domain, bifurcated 2	within coordinates
Tssr125903	transcription start site region 125903	196 bp downstream
Tssr125904	transcription start site region 125904	169 bp upstream
Tssr129008	transcription start site region 129008	1 bp downstream
Tssr129009	transcription start site region 129009	310 bp downstream
Tssr129010	transcription start site region 129010	325 bp downstream
Tssr129011	transcription start site region 129011	524 bp downstream
Tssr129012	transcription start site region 129012	531 bp downstream
Tssr129013	transcription start site region 129013	533 bp downstream