rs36385644 SNP Detail

Summary

• ID
  rs36385644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83486149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCAGGCT GGGTATGATA
  ATAATAATAA TCACTGCACC CTTGGAGGTA GAAGCAGGGC AATTAAGAGT TCAGGGTATT
  TTCAACTACA AAAGGAATTT GAAGTCAAGC CTGGGCTACA CAAGACCTGG TCTGATTTTT
  TTTTTTTCAG AATCTCTTTG GTTCTATTCT AAATTCCTAA GAGAAAGAGC CTGCAGCATG
  R
  AGCTAGGGTT TTATAGAACA AACAAGAGCT GGGTTAGTTA CTTTTCTTGT TGCTGTAGCA
  TGATACCTGA CACAAGCAAG GTATGAGAGG AAAGGTTTGT TGGCTCTTGG ATTCAAAGGA
  TTTCAGTCCA GGACAACGGA TTAAGGCCCA CCTTAGAGAC AGACCTACCC TCCAGACATG
  CCTCATCTCC TGAAGGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354479	NES13746087	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36385644					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354479	NES13746087	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83486149 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	1781 bp distal
Rr399724	regulatory region 399724	1989 bp downstream
Rr632885	regulatory region 632885	1708 bp distal
Rr632886	regulatory region 632886	369 bp proximal
Rr632887	regulatory region 632887	1236 bp proximal