rs36386812 SNP Detail

Summary

• ID
  rs36386812
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69273737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAAATCC CAGCAACCAC
  ATGGTGGCTA ACAGCCATCC GCAATGAGAT CTGATGCCCT CTTCTGGTGT GTCTGAAGAC
  AACTACAGTG TACTTAGATA TAATAATAAA TAAATCGTTT TTAAAAAAAT CTAAATGAGA
  TGGGTACACT GGACATGTGA GATGACCCTG TCCTGACTGG AGTGTATGAG ACTCAAAGCC
  K
  AAACTCTGAG TTAAGTTTTT GTTTGATTTT CTAGACAGAG TTTCTCTGCA TAGCCCTGGC
  TGTCCTGGAA CTCACAGAGA TTCACCTGCC TCTGCCTCCA GAGTGCTGGG ATTAAAGTTG
  TGCTGGATAG CTGGCCCACA GTGAATGCAG GCATGAGTGC CATTGAGTCT CTAAATCAGA
  GGGTAATCTA CTACACAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51013779	NES14402744	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36386812					SNP	G	G	G	G	T	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51013779	NES14402744	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69273737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	812 bp proximal
Gm47545	predicted gene, 47545	956 bp upstream
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	within coordinates
Rr403319	regulatory region 403319	1051 bp upstream
Rr467012	regulatory region 467012	732 bp proximal
Rr467013	regulatory region 467013	1206 bp proximal
Rr467014	regulatory region 467014	1228 bp proximal
Tssr113624	transcription start site region 113624	1669 bp upstream
Tssr116494	transcription start site region 116494	1204 bp downstream