rs36387837 SNP Detail

Summary

• ID
  rs36387837
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60658122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG ATAATAATAT ACTTTCTCCT
  R
  TGAGCAAAAC ACATCTATGA AGCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50418830	NES13463081	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	G	A	G	A	A		A	A	A		A
ss147246153	ENSMUSSNP5563596	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss325639819	CHEV_18_60684704	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36387837					SNP	A	A	A	G	A	G	G	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418830	NES13463081	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60658122 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	853 bp proximal
Dctn4	dynactin 4	1135 bp upstream
Gm58902	predicted gene, 58902	within coordinates
Rr346411	regulatory region 346411	1522 bp distal
Rr352957	regulatory region 352957	278 bp proximal
Tssr151313	transcription start site region 151313	1144 bp upstream
Tssr153448	transcription start site region 153448	926 bp downstream
Tssr153449	transcription start site region 153449	993 bp downstream
Tssr153450	transcription start site region 153450	1036 bp downstream