rs36388931 SNP Detail

Summary

• ID
  rs36388931
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49314401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGCGTGC GAGCACGTAA
  GGCAGAAACA AGGTTTAGGA GTCAGTTCTC TCCTAATGTG GACCCTGGTG GGTTGAACTC
  ACGTTCTCAG GCTTTTACAG CAGGAGTCTT ACCCACAAGC CACCTTGCCT GCCCTCAGAC
  CACACATCTC CCTTCACAAT TGTGTGTAGT TTCAGAACAG CTACAAAAGG TTGATGACAG
  R
  GTTCGGAGAG GCCTCACTAA GTCCGAGGTG AGAGCTCATA GAAACTAGTC CCTGAAAATT
  AGACAAGCTC TGAGCCTCTC AGTGAGGAGC TGCAGAGAGG CCTGCTGAGG CGGAGCTGAG
  GAAGGAGCTG AGAAGCCACG GCCAGGTCCA CAGGATTAGA GCATCAGTCA GGGTGCAGGG
  CGGCGTCTGG ATGGATGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51656367	NES14830485	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		A	G
ss321795969	CHEV_6_49287466	CHEVERUD	SCREENING_POP	f	SNP					A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs36388931					SNP	G	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51656367	NES14830485	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49314401 () rs orientation: forward

Symbol	Name	Function Class
Ccdc126	coiled-coil domain containing 126	within coordinates
Rr629883	regulatory region 629883	1006 bp proximal
Tssr60889	transcription start site region 60889	1221 bp downstream