rs36389502 SNP Detail

Summary

• ID
  rs36389502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83484855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAAATAG GTAAATGTTC
  ACTTGGAGGA ATCTCATCAG GATAACGAGT TGGATTAAGC ATGGTATTGG CTCTGTAAGA
  ATGAATCCTG GAGAGGAGAC ATGTACAGGA CTATATGCAG TGAGTGAGGG GAGAGGAGGC
  ATGGAAGAGA CTTTCTGAAA CATAAAATCT ACAGTCCTGC AGTTGTTGGA AAGATGTGAC
  Y
  TGTGGAGCCT AGCACACACA AAGCTGTGGG CTGGATCTGG AGCAGAGAAC TCCAGTATGG
  TGGCACACGC CTGTAATCCT AGAACTTGAG AGGTGGAGGT AGGAGGCTCA GAAGTTCAGT
  CATCCTTGGC TACACAGTGC ATTGGAGGCC ATCTTGGGAT GTACGAGACT AGCTCAAAAA
  GGAGGAGGGG GCTTGCAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354485	NES13746108	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36389502					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354485	NES13746108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83484855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	487 bp distal
Dguok	deoxyguanosine kinase	968 bp upstream
Rr399724	regulatory region 399724	695 bp downstream
Tssr1908	transcription start site region 1908	767 bp downstream
Tssr61663	transcription start site region 61663	1613 bp upstream
Tssr61664	transcription start site region 61664	1050 bp upstream
Tssr61665	transcription start site region 61665	1038 bp upstream
Tssr61666	transcription start site region 61666	1023 bp upstream
Tssr61667	transcription start site region 61667	997 bp upstream
Tssr61668	transcription start site region 61668	979 bp upstream
Tssr61669	transcription start site region 61669	946 bp upstream