rs36389654 SNP Detail

Summary

• ID
  rs36389654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:88861576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTTGCG TGGCTCCGCT
  CTGTAGCTAC ACCCAACTTA TCCCTTCCCG TGGTCCCCCA TAGTCCCCAT AGTCCCATGG
  CTTCTGTAGT CTTTCCCAAT CCAAGGTCTT GACCCCAGCT GTGGCCAGAA CTCTTGTTAG
  TCACTCCATA GAGCTACCCT GAAGCATGAG GTTGGCCTCC AGCCTTCACA GATCACGCAT
  R
  TGCAGGGGTA TGCTGGCATG TGGTCACAGG TAACCTGTGG CCTCAGGATA AGTACAATTT
  AGGGGCATAG GCTCCCGTGG CAGATACTGA GAAAAGTAAC TGATAGGACA CAAACAAAAG
  AAATGCCATC GGTGGCAGTG GTGGCTCACG CCTTTAATCC CAGCACTTGG GAGGCAGAGG
  CAGGTGGGTC TCTGAGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51740355	NES14560034	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36389654					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51740355	NES14560034	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88861576 () rs orientation: forward

Symbol	Name	Function Class
Mlc1	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	Intron
Rr507763	regulatory region 507763	997 bp proximal
Rr507764	regulatory region 507764	1624 bp proximal
Tssr135826	transcription start site region 135826	471 bp downstream
Tssr135827	transcription start site region 135827	550 bp downstream
Tssr135828	transcription start site region 135828	1169 bp downstream
Tssr135829	transcription start site region 135829	1194 bp downstream
Tssr135830	transcription start site region 135830	1400 bp downstream
Tssr135831	transcription start site region 135831	1585 bp downstream