rs36389924 SNP Detail

Summary

• ID
  rs36389924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20368886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATG GAGAGGCAGG GGAGGAAAAT
  Y
  AGAACTTCTT TTGTGAGAGA AGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51076129	NES14368648	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	T	C	T		C	T	C	C		C
ss148761268	ENSMUSSNP207911	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss324281237	CHEV_13_20276585	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36389924					SNP	C	C	T	C	T	C	T	C	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076129	NES14368648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20368886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	534 bp proximal
Elmo1	engulfment and cell motility 1	within coordinates
Rr403595	regulatory region 403595	347 bp upstream
Tssr118580	transcription start site region 118580	224 bp upstream
Tssr118581	transcription start site region 118581	282 bp upstream
Tssr118582	transcription start site region 118582	571 bp upstream
Tssr118583	transcription start site region 118583	606 bp upstream
Tssr118584	transcription start site region 118584	687 bp upstream
Tssr118585	transcription start site region 118585	700 bp upstream