rs36390599 SNP Detail

Summary

• ID
  rs36390599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:130411824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTGTCT TGGCTTCCTC
  TTTCCATATA GAGCATCGCT GGCTTGGTTT GACCTTGTCA CTTCACAAAG GCAGGTTTAG
  GAGGAGAAGA GGGTCCTACA CCTGATGGTA GCATCCTAGG GAGGGTCTGA GGCCCCCCGT
  TCACACCCAC AATCTTAGCG TGCACTTGGA CATGCATACC AGACACTGTT AGATACGGAA
  Y
  GCTGATTGGC TGAGTTTATT TTGTGTTCCT ATCAGGGGAA ATGGGATTAA AATTCCCAGG
  CTAGGGCTGG AAGAATGGCT TCATCGGTGT GGTACCTGCC ATCTAAGTAT GAAGACCTGG
  GTTTGAATCC CAAGCACCCA TATAAAGGAA GATCAGTGGG CCAGGCAGTG GGGCTCATAG
  ACAGGCAGAC TAGTCAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51851753	NES14692083	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36390599					SNP	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51851753	NES14692083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:130411824 () rs orientation: forward

Symbol	Name	Function Class
A330070K13Rik	RIKEN cDNA A330070K13 gene	within coordinates
Caln1	calneuron 1	within coordinates
Rr621523	regulatory region 621523	1375 bp proximal
Rr621524	regulatory region 621524	1654 bp proximal
Tssr49063	transcription start site region 49063	1582 bp upstream
Tssr49064	transcription start site region 49064	1709 bp upstream
Tssr49065	transcription start site region 49065	1735 bp upstream