rs36390657 SNP Detail

Summary

• ID
  rs36390657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:34567055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAATTAA TTTCAGCAGT
  TTCTAGGTCT AGACACAATG GTAGGATAAT TTTTTTGTAC ACCATGTGAT GATGTGTCTC
  TTCCTTGCCT GCCTAAGGCA ACTCCTGATT GGTTTAATAA AGAGCTAAAC GGCCAATCGC
  TAGGCAAGAC TTCCAGGAAG AGAGAGGAAC TCTGGGAAAG AATCAGGTGC GAGGTGTTTG
  Y
  CAGGTAACGA GCCATGTGCC AGACCATAGA TGTGTTTTGA GCTGGTTGGG AAGAAGGCAG
  CTAAGGCCAA GCTTTCATAA TTAATAAAAG GTCTCTGTGC CATTACTTAG GTGGCTGGCA
  GGTTGAGGCA GACCGGCGAT AAGATAGTGA CCTAGAAGGG AAGAGCCCAG TGAAGAAGGT
  GTTGAGAGTA GAGGCTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51080077	NES14355258	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36390657					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51080077	NES14355258	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:34567055 () rs orientation: forward

Symbol	Name	Function Class
Rr275700	regulatory region 275700	within coordinates
Rr275701	regulatory region 275701	746 bp proximal