rs36390900 SNP Detail

Summary

• ID
  rs36390900
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35515239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGACAA TCACCCAATT
  TCCACTTTGG ATGAATGGTT CAGTCATGAA GTTGTAAGTT AACATATTGA CAACAGAAAC
  AATTTCATGC ATGTTATTTT TGTAACTGTA AATTCTTTAT TAATGTTTTG TATTTTAAAT
  CCCCTATGTT TGAGCAGGGG CTGGAAAAAC AAGAGCCACT CACTTTGAGA CAATCGTGTG
  K
  TGTTCCACTA CTGGTTGATG TATTTTTCTA TAACTCTACA TTGAAGAGAC GGTAGTTCAG
  GTTTCTATTT GTTACTAGCT AAGGTAGTCA GAAGGTAGCT TGCCTTAAAC ATCCATTACA
  ATCAACTAAG CAGATCAAAT ACATGTGAAA AGTCTAAATT ATAAGGCATC AAGTGGAGAA
  AAAACTATCA TCCTTGTACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51601185	NES14847543	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36390900					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51601185	NES14847543	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35515239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17298	CpG island 17298	822 bp proximal
Gm68014	predicted gene, 68014	1531 bp upstream
Mtpn	myotrophin	within coordinates
Rr146138	regulatory region 146138	within coordinates
Rr399612	regulatory region 399612	1453 bp upstream
Tssr60312	transcription start site region 60312	21 bp upstream
Tssr60313	transcription start site region 60313	1403 bp downstream
Tssr60314	transcription start site region 60314	1443 bp downstream
Tssr60315	transcription start site region 60315	1461 bp downstream