rs36391174 SNP Detail

Summary

• ID
  rs36391174
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92423976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTGTTAA AGCACAGCCT
  CAGGTTGCCC AAGCTGGGCT TGGACTCCGT CGGGTTTACA AGCTTCATTA CTGGAAAGAG
  TCTATGGCTC TCCTGGCACC AGCAGCGGCA GAGATGTTCA CCGGACAATG AAAAGTTTCT
  GTTTACAGAC TAAAATCAAA GCATGGCCTT CCTTGACACG GTGATGGCGA AGTTCAGAAG
  S
  AACAGCTGGG AGTGTGACAA GCGCCTACTC AGCCAAGCAG ACTGAAGCCC TCGCAGTCAC
  CACTCACCTC CGGGAGCGCC GGGTTCAGTA GAGAAAGAAG GTCTAGCCAG GGCGTGCCGA
  GGAAGCTTCT GGAACCCCGG GAGAGCAGAG GGGCGCACGT TCCACAAGCA AGCTCCCTGG
  AGCCCCGGCG TGAGGCGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52036449	NES15053658	PERLEGEN	MM_PANEL2	f	SNP	C	G	G		C	C		C
ss323074152	CHEV_9_92436761	CHEVERUD	SCREENING_POP	f	SNP				C			G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36391174					SNP	C	G	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036449	NES15053658	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92423976 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	within coordinates
Gm37545	predicted gene, 37545	1840 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	300 bp upstream
Rr684632	regulatory region 684632	within coordinates
Rr684633	regulatory region 684633	995 bp proximal
Rr684634	regulatory region 684634	1122 bp proximal
Tssr86520	transcription start site region 86520	332 bp upstream
Tssr86521	transcription start site region 86521	507 bp upstream