rs36392500 SNP Detail

Summary

• ID
  rs36392500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16678650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCCCGCTGAG CGTCTAGACC CGGGTACGCG CTTCACTCCA GACTCCGCGG
  R
  AGCACAGGCG AGCCGCTGCT CTCACTCACC CCCACGCCCA CCAGGTGCGT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss51882288	NES14894012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs36392500					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882288	NES14894012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16678650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	within coordinates
Cpgi18407	CpG island 18407	1535 bp proximal
Gm71929	predicted gene, 71929	567 bp downstream
Pnma8b	PNMA family member 8B	within coordinates
Rr368243	regulatory region 368243	68 bp downstream
Rr642821	regulatory region 642821	1356 bp distal
Rr642822	regulatory region 642822	33 bp distal
Rr642823	regulatory region 642823	99 bp distal
Rr642824	regulatory region 642824	918 bp proximal
Tssr64660	transcription start site region 64660	5 bp downstream
Tssr64661	transcription start site region 64661	969 bp upstream
Tssr70792	transcription start site region 70792	924 bp downstream