rs36392946 SNP Detail

Summary

• ID
  rs36392946
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:49314747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTATGTTT AGGTAGATTT
  TTTTTTTTTG CGACACCATT TTACTCAGTA GAGAAAACAG TCGAGTAGAC TGAATAGTCT
  AATTGTTTCC ACTCATAAAA CCCTGTTCTT GTGTCTTTTG TCTTGAGTAG TCTAGCATTT
  ATGAATGCGT GTGTGTTCCA ACTTTTGGCA TTGGAGGACA AGTCAAGGAA TGACTGCTTT
  M
  TTGCTCTCAC TACCTGCAAT ATCATATACT CTTAAAGTAT ATTTGTCTTT AGTGACTTTT
  TAATACAACT CATTTGGAGA CTTAACCAAT GTCTATAGAT AGAAATGTTG AACTCAAACA
  TAAATCTATT TCTAAGCACC ATTTGTTTCT GCTTATAAAA TTGTTATTTA TTTATTTAGT
  GTACTTTTCA ACTTACATAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51106724	NES13870506	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs36392946					SNP	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51106724	NES13870506	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:49314747 () rs orientation: forward

Symbol	Name	Function Class
Kcnip4	Kv channel interacting protein 4	Intron
Tssr50938	transcription start site region 50938	1967 bp downstream