rs36393034 SNP Detail

Summary

• ID
  rs36393034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127755484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTCTGT CAGTTCTTTA
  TTCACTGTGA CCTTCCTTGA GCAAAGTATT AGCCGCTCTG TGCTTCATTT TTCTCTCACA
  TAAATCAAGG GTAATAATAG TATCAATTTC ACGGTATTAT TATAAAGATT AAGAGTTAAT
  AATGAGTAAA TTACACAGAA CAGGGCATAG CCTGAAGTCA AGGGTGCTAT GTGATCCGTA
  Y
  TCTCACCCTG AAGTGCTGCT TGTATTGCCT CGGGGTGGCT GAGAAGACCC TGAAGAGGGT
  TGTGATGGAC AGACCCTCCC TTCAGTGACG CAAACACCAC CATGGACTAG GTTTGTCCCA
  CTGCACCGCT GACTTCTGCA CAGCCAAGGC CCCAGACTTC ATCTCCTTGT CCATAGATCA
  TTTCTGTTTT GTGTTGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50945543	NES14147453	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss323530645	CHEV_10_127356671	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36393034					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50945543	NES14147453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127755484 () rs orientation: forward

Symbol	Name	Function Class
Gm15905	predicted gene 15905	1454 bp upstream
Gm40804	predicted gene, 40804	within coordinates