rs36393560 SNP Detail

Summary

• ID
  rs36393560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:55242004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCCTTAA ACTTGGCGGG
  GTGAGAGCCG GAGCTGAGCT GGTGTGTCTG CGGAAAGGGA GCCACTTCAA CTGAATGGCT
  CTCTGCCCCC GTGGTTCCTG GCTTATTTAT CTATTCTGTT GTCTCTGCGA GGTGCAGAGG
  TGCCTGGCTT TTTGAATCAG GGAGGTCTGG GGACTGGCGA AAGGAGCTAC ACAGAGAAAG
  R
  GACAGTCGTG CTGCATCTAA CCTAAGGGCG GAGGTCCCTC TAGCTGGACT TTCCTGTCCT
  GCGAACGCAG CGGGGAACAA CGTCACCTCC GTTTCTCTGG CAATGAACCC AGGGCCACCT
  CAACTCGTTT TCATTTGGAT TTTCATCTTG GAGAAGAGCT AGTGGGACCA GCGGGAGCAG
  GTGGACTGTG TTGATGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51221524	NES14297449	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36393560					SNP	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221524	NES14297449	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55242004 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Acsl5	acyl-CoA synthetase long-chain family member 5			Intron
				mRNA-UTR
Rr370538	regulatory region 370538			312 bp upstream
Rr406037	regulatory region 406037			1063 bp upstream
Rr549782	regulatory region 549782			1382 bp distal
Rr549783	regulatory region 549783			193 bp distal
Rr549784	regulatory region 549784			within coordinates
Rr549785	regulatory region 549785			937 bp proximal
Rr549786	regulatory region 549786			1098 bp proximal
Tssr5558	transcription start site region 5558			1729 bp downstream
Tssr157068	transcription start site region 157068			1669 bp downstream
Tssr157069	transcription start site region 157069			1628 bp downstream
Tssr157070	transcription start site region 157070			1609 bp downstream
Tssr157071	transcription start site region 157071			69 bp upstream
Tssr157072	transcription start site region 157072			121 bp upstream
Tssr157073	transcription start site region 157073			328 bp upstream
Tssr157074	transcription start site region 157074			394 bp upstream
Tssr157075	transcription start site region 157075			409 bp upstream