rs36393896 SNP Detail

Summary

• ID
  rs36393896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTAGGT CGCGCCGAGT
  GCAAGTCCTA GCTATCCCTC TGTGCTCACT AGCCACTGTT TTCTATGTAC TGCCATCTGT
  TTTCTCGAAC TTTCTCTCCT AGTCAGAAAC CAGCAGTCTT GAGTTTCCTG GGGCTCCTCT
  TTCTTGTCTG GGCTTTTCCA TTTCACTACC CACGAGGGGA TGGGGAACTG AAAACAGCAG
  Y
  CCTACAAGTC ATCAACTCTG TGTGACGTTG GGTTTCCTGC AGTGCTACCT GTCTTGAGCA
  GTTCTGTGCC CTGACACAAA GCAAATCCGG TGCTCTGTGT AAGTGAACGC AGTGGGACCA
  CCGCGCTGAC TCATGATCTG CGGGCTCTCT TTGGGAGCCC TGGAAGTGTC TCAGGGAGGA
  AAATGATCCC CAAACCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50674830	NES14008191	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	C		T
ss322906507	CHEV_9_37063297	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36393896					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674830	NES14008191	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	125 bp distal
Gm48081	predicted gene, 48081	within coordinates
Rr676656	regulatory region 676656	309 bp distal
Rr676657	regulatory region 676657	204 bp distal
Rr676658	regulatory region 676658	within coordinates
Rr676659	regulatory region 676659	16 bp proximal
Rr676660	regulatory region 676660	324 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	299 bp upstream
Tssr88821	transcription start site region 88821	348 bp upstream
Tssr88822	transcription start site region 88822	320 bp upstream
Tssr88823	transcription start site region 88823	293 bp upstream
Tssr88824	transcription start site region 88824	270 bp upstream
Tssr88825	transcription start site region 88825	251 bp upstream
Tssr88826	transcription start site region 88826	159 bp upstream
Tssr88827	transcription start site region 88827	77 bp upstream
Tssr88828	transcription start site region 88828	47 bp upstream
Tssr88829	transcription start site region 88829	29 bp upstream
Tssr88830	transcription start site region 88830	1 bp upstream
Tssr88831	transcription start site region 88831	18 bp downstream