rs36394107 SNP Detail

Summary

• ID
  rs36394107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72715289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCAAGC TTAGCCGTGC
  TGGGAGGGAA CACAAAAAAT AACTGACCAT GCCACAGTGA CGATCCCTTA ACATCAGGGC
  TGAACTACAA CATGAATAAA AGAATAAACC CCATTTAGGC TAGTGTTGTA AGGGTCTTAG
  GGTCAGGAGA CAACAGTGAT GAGAAAGGAC ACCAAGAAGG AACCATCAGA GTCAAATCCA
  Y
  TGTGTGCAAG AACGACAAGA CTACAACTTA CAGTGTGCTT CCTTTGGCCC AGGATCCGGT
  GGCTGGGCCA GAGCATCAGA ACCATTTCTG TGCCTGAGGA ACCTGCTTGT TTTAAGTTAT
  GTGTATGTAT CTGCCTGCAT GTGTATATTT GTACATGCTG GTGACCTGGA GCTTGTGCTA
  TGACAACTGT GAGATGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51693393	NES14824475	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36394107					SNP	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51693393	NES14824475	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72715289 () rs orientation: forward

Symbol	Name	Function Class
Gm67726	predicted gene, 67726	1324 bp downstream
Rr136561	regulatory region 136561	1312 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates