rs36396305 SNP Detail

Summary

• ID
  rs36396305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:9962171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTGCAC TTGGAAAAGA
  GTGTGAATCA GTCACTACTG GAACTGCACA AACTGGCTAC TGACAAGAAT GATCCCCACG
  TGAGTATCGG AAACGTGGGA TGAGTGGAGG AGATGATTTG CCGCAGGACT TGGGAGAGCT
  GACCAGTAAC TTTGTCCCAT GTTCTCTTTC CTAGTTATGT GACTTCATTG AGACGTATTA
  Y
  CTGAGTGAAC AGGTGAAATC CATTAAAGAA CTGGGTGACC ACGTGACCAA CTTACGCAAG
  ATGGGTGCCC CTGAAGCTGG CATGGCAGAA TATCTCTTTG ACAAGCACAC CCTGGGACAC
  GGTGATGAGA GCTAAGCTGA CTTCCCCAAA GCCACGTGAC TTTACTGGTC ACTGAGGCAG
  TGCATGCATG TCAGGCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605198	NES13645674	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36396305					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605198	NES13645674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9962171 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Best1	bestrophin 1			367 bp downstream
Cpgi10595	CpG island 10595			1422 bp distal
Fth1	ferritin heavy polypeptide 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr543966	regulatory region 543966			805 bp distal
Rr543967	regulatory region 543967			225 bp distal
Tssr155004	transcription start site region 155004			1955 bp downstream
Tssr155005	transcription start site region 155005			1689 bp downstream
Tssr155006	transcription start site region 155006			588 bp downstream
Tssr155007	transcription start site region 155007			515 bp downstream
Tssr155008	transcription start site region 155008			224 bp downstream
Tssr155009	transcription start site region 155009			96 bp upstream
Tssr155010	transcription start site region 155010			286 bp upstream
Tssr158136	transcription start site region 158136			1867 bp upstream
Tssr158137	transcription start site region 158137			570 bp upstream
Tssr158138	transcription start site region 158138			481 bp upstream
Tssr158139	transcription start site region 158139			188 bp upstream
Tssr158140	transcription start site region 158140			within coordinates
Tssr158141	transcription start site region 158141			50 bp downstream
Tssr158142	transcription start site region 158142			66 bp downstream
Tssr158143	transcription start site region 158143			125 bp downstream
Tssr158144	transcription start site region 158144			282 bp downstream