rs36396999 SNP Detail

Summary

• ID
  rs36396999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11351605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG GGGTTCGATG ATGACTGACT
  Y
  AGTTTGTTAT ATGTTACCTT GCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50595986	NES13637741	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36396999					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50595986	NES13637741	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11351605 () rs orientation: forward

Symbol	Name	Function Class
Ms4a4a	membrane-spanning 4-domains, subfamily A, member 4A	1282 bp upstream
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544326	regulatory region 544326	732 bp proximal
Tssr155162	transcription start site region 155162	1701 bp downstream
Tssr155163	transcription start site region 155163	1685 bp downstream
Tssr155164	transcription start site region 155164	1654 bp downstream
Tssr155165	transcription start site region 155165	1569 bp downstream
Tssr155166	transcription start site region 155166	1528 bp downstream
Tssr155167	transcription start site region 155167	1217 bp upstream
Tssr155168	transcription start site region 155168	1247 bp upstream
Tssr155169	transcription start site region 155169	1296 bp upstream
Tssr155170	transcription start site region 155170	1325 bp upstream
Tssr155171	transcription start site region 155171	1340 bp upstream
Tssr155172	transcription start site region 155172	1355 bp upstream
Tssr158339	transcription start site region 158339	1980 bp upstream
Tssr158340	transcription start site region 158340	1868 bp upstream
Tssr158341	transcription start site region 158341	1851 bp upstream
Tssr158342	transcription start site region 158342	1292 bp upstream