rs36398500 SNP Detail

Summary

• ID
  rs36398500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72533172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTGTCTC TACCTTCTTG
  TGTCTCCCAG AGCAATGAGT GGCAGAGGGC TCAGGGTTGC CTAGGAGGCC ACTCAGCCCG
  GTTTTTTGGG TTGCAGGAAG GTGGTGTAGA GTCGGCATTT CACAAGACAA CCTCGGGCGC
  CACCCCAGCA GCCATCAGGA AGCTCTACCA GGTTAAGGGG AAGAAGAACA TCCGTGCGAC
  Y
  GAGAGGGCTC TGAGTTGGGA CAGCTTCAAC ACTGGGGACT GCTTCATCCT GGACCTGGGT
  CAGGTTGGTG TGGCTGGGAG GCTGGGGAGG AAGAGCTGAG GTGTTCTGGG GACCAAGCCC
  ATCCACAAGA AGACATCTCC ATCCAGTGAG CCCTTAGGGA TGCCCAGGGC TTATTTCCCA
  GCCACTCATA GACAGTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51696144	NES14820984	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36398500					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51696144	NES14820984	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72533172 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	386 bp downstream
Tssr57143	transcription start site region 57143	360 bp downstream
Tssr57144	transcription start site region 57144	71 bp downstream
Tssr57145	transcription start site region 57145	31 bp downstream
Tssr57146	transcription start site region 57146	12 bp downstream
Tssr57147	transcription start site region 57147	1145 bp upstream
Tssr61469	transcription start site region 61469	1600 bp downstream