rs36398632 SNP Detail

Summary

• ID
  rs36398632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCCCTC TCCCTCTCCC
  TCGCTCTCGC TCTCTCTCTC CTTGGCTTGG TTTACAGGCA GTCTTGCACT ATATACTAAG
  GAAAGGTTGA AAAAATATAT AGCCAGCGCG ATCTTAAGCT TATGAAATAC GTGATCTTTA
  TAAAATAAGG GAGGAACCGA ACAATACTGG GGGAGGGGAG CGGTGTGTGT GTATGTCTTT
  Y
  CTCTCCTATT CTTGCAAACT TTTCATCCAA TCGGAAACTA GAAGGATGCC GCTTGTGCAT
  TCTGGCTCAC TAGCCGACAT CCCGGTCCCC CGCCGTCACA TGCTGTTATT GAACTTGGGA
  AATATCCCAG TCCGGAGTGC ACAAGCCTCT TCCAGACCCA CCTCCCGGCC GTAGCCGGGT
  CACAGGAAAG CCCAGCGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss51618317	NES14659876	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	T	T	T	C	C	C		C		T
ss135871353	ENSMUSSNP28849	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T						C
ss320956921	CHEV_3_127493398	CHEVERUD	SCREENING_POP	f	SNP											C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs36398632					SNP	T	T	C	T	T	T	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618317	NES14659876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	352 bp distal
Cpgi13801	CpG island 13801	158 bp proximal
Gm56817	predicted gene, 56817	223 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	558 bp distal
Rr584861	regulatory region 584861	661 bp distal
Rr584862	regulatory region 584862	234 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	335 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1278 bp downstream
Tssr31595	transcription start site region 31595	1266 bp downstream
Tssr31596	transcription start site region 31596	1233 bp downstream
Tssr31597	transcription start site region 31597	1193 bp downstream
Tssr31598	transcription start site region 31598	1170 bp downstream
Tssr31599	transcription start site region 31599	671 bp downstream
Tssr31600	transcription start site region 31600	603 bp downstream
Tssr31601	transcription start site region 31601	551 bp downstream
Tssr31602	transcription start site region 31602	497 bp downstream
Tssr31603	transcription start site region 31603	479 bp downstream
Tssr31604	transcription start site region 31604	355 bp downstream
Tssr31605	transcription start site region 31605	122 bp upstream
Tssr31606	transcription start site region 31606	320 bp upstream
Tssr31607	transcription start site region 31607	558 bp upstream
Tssr31608	transcription start site region 31608	626 bp upstream
Tssr31609	transcription start site region 31609	677 bp upstream
Tssr31610	transcription start site region 31610	786 bp upstream
Tssr31611	transcription start site region 31611	894 bp upstream
Tssr35598	transcription start site region 35598	722 bp upstream
Tssr35599	transcription start site region 35599	640 bp upstream
Tssr35600	transcription start site region 35600	612 bp upstream
Tssr35601	transcription start site region 35601	579 bp upstream
Tssr35602	transcription start site region 35602	262 bp upstream