rs36398681 SNP Detail

Summary

• ID
  rs36398681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5123309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCTCCCA CTTAGGAAAA
  GAAACCAGTA ACCCTTCCCA CTCATGCTCC GCCTCCTGCC TCCCTGGATG TGAAATACAC
  TCGGTTTGCG CGCACACAAC CACCACGCGC ACGCGCATAC GCTCTAACCC TCTTACCTCT
  AAACAGAAAG CCCCCCGCCC CCCCCCCATC CCAGTCCTGG AGCCCCTTTT CCTTCTCAGT
  Y
  ATACGGTTAA AGAGCCGGAC AGTGTCAATG ATTGGCCATT TAGCGCCATC TGGCGTTGGC
  AACCACAGAC TTACAGTCAC CGGAAGGTTA TAAAATGCAT ACTAATTGTT CAATAATTAT
  TTGATTTGTT TGTGCTACTA AATATCTGCT GATTCCCCTG CCTCACAAGA CAAATATTCT
  TCCTCATGTT TGGGATTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50580604	NES13651883	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36398681					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50580604	NES13651883	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5123309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10429	CpG island 10429	1513 bp distal
Cpgi10430	CpG island 10430	864 bp distal
Gm46658	predicted gene, 46658	within coordinates
Rr405800	regulatory region 405800	983 bp downstream
Rr405801	regulatory region 405801	within coordinates
Rr542921	regulatory region 542921	1042 bp distal
Rr542922	regulatory region 542922	within coordinates
Rr542923	regulatory region 542923	40 bp proximal
Tmem151a	transmembrane protein 151A	within coordinates
Tssr157540	transcription start site region 157540	1191 bp upstream
Tssr157541	transcription start site region 157541	1152 bp upstream
Tssr157542	transcription start site region 157542	758 bp upstream