rs36398841 SNP Detail

Summary

• ID
  rs36398841
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131002037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAATAAA AATAAAAGAT
  TCTTGGCAGC CAGCAGTAGT ATGCACGCCT TTAATACCAG CACTTGGGAG GCAGAGGCAG
  GTCAGCCTGG ACTACAGAGT GAGTTTCAGA ACAGCCAGGG CTACACAGAG AAACCCTGAC
  TCTAACCCGC CCCACCCCCA CCCCCCAAAA AAAGGTTCTT GGCCCTCAAG ACCTCAAGAA
  M
  GTACTCTGCC ATGGAGGAGG GCCCTGTGAC AGTCATCTGT AGTCCCTTCT GGAAGAGCTG
  CAGCAGAGAG CCCCAGGACT GGTCTACCCA GGTCTCACAG TCTCTGGTCT TGGGTCTGCA
  TGGGGTGAGA GAGTAGGGAG AGAAACCGGG GCCTCTAATT AATTCATCTA ACTTCTGATC
  TGCACCGCCT CGTGGTGCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51634433	NES14649199	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36398841					SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634433	NES14649199	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131002037 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	Intron
Rr367559	regulatory region 367559	193 bp upstream
Rr585291	regulatory region 585291	173 bp distal
Rr585292	regulatory region 585292	229 bp distal
Rr585293	regulatory region 585293	within coordinates
Tssr31722	transcription start site region 31722	1864 bp downstream