rs36399439 SNP Detail

Summary

• ID
  rs36399439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31218382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGCCACT GTGTGTCCTG
  AGTCAGGACA TGGCTGACCA AACCAAGCAC ATCCCTGTGA ATCACAGGCG TCGGGTTTCC
  GGTAGCGTTA GTGTGGGTTA AGACCTGCTT TGTCATGGGA GCTAATCGAT GTGACTCAAC
  ACACAGGCAG GGGGGTGTGT TAGATATTAA AGTCCCATCT CTGTGTGGCC TCTTGTCACA
  Y
  AGCTGCATCT GTGCTTTGCA CCCACAGCAG ACTCAGCTGT TGCAGAGAGA CAGTACTGGG
  GAAACGATAA GATTGTCATT TCCCAGTTGA CTAATTTGTT CCTCCACAGA AGAGCAGTGT
  AAGTTTAAGT GCAATTCTGC ACATGTGCTC CTGGCCTGCA GTTTGAGTCA GGTGCGAAGT
  AAAATGGCTG TTCCTATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51508759	NES14639864	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
ss52709795	NES15559207	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36399439					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51508759	NES14639864	PERLEGEN	MM_PANEL	f	SNP	C/T
ss52709795	NES15559207	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31218382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	667 bp distal
Eaf1	ELL associated factor 1	within coordinates
Mettl6	methyltransferase 6, methylcytidine	1385 bp upstream
Rr296978	regulatory region 296978	within coordinates
Tssr124944	transcription start site region 124944	1330 bp downstream
Tssr124945	transcription start site region 124945	1244 bp downstream
Tssr124946	transcription start site region 124946	2 bp downstream
Tssr127966	transcription start site region 127966	1440 bp upstream
Tssr127967	transcription start site region 127967	1371 bp upstream