rs36399521 SNP Detail

Summary

• ID
  rs36399521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27775722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCATCTTCT TAATGCTCAC AAAGTGTCTG ATTCGTTCAT
  TTATTTCAGA TTTCAGATGT TGGAGTCAAG GGTATGTAAT CCAGACAATG GCCACTAGGA
  Y
  GCCAACCCCT GCACAGATTC TAAACACTGT AATTAACTCT TCCTTTACCA GAGATACCCA
  TCTGTACATT CCTGTCAGAC TAGCAGTTTC TCTTTTTTTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51887650	NES14908324	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36399521					SNP	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887650	NES14908324	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27775722 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	within coordinates
Tssr65346	transcription start site region 65346	1109 bp downstream
Tssr65347	transcription start site region 65347	1082 bp downstream
Tssr65348	transcription start site region 65348	1055 bp downstream
Tssr65349	transcription start site region 65349	995 bp downstream
Tssr65350	transcription start site region 65350	969 bp downstream
Tssr65351	transcription start site region 65351	947 bp downstream