rs36399778 SNP Detail

Summary

• ID
  rs36399778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66590433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAAGCCC GAGTAGTTTA
  GCTCACTCTC CCTGTGTTGT CTCTGAGTCC TCTAGGGCCA AGTAATAAAT AAATATTTGC
  TAGTTCGTGC AGATGGAATG ACTTAAGGAA AACAAGCAGG CAGAGGAACA TACAGGAACC
  ATCGAATGTA AACAAGGACG ACAAGCAGCG GGAGTTGGGG ACCTCCAAAT CCCTCTAATC
  Y
  GGTGGCTCCC ACTCTGCTAA CTTTACTACG TGGCTATTTT AGAAAATGAA GTCTGAGTAA
  CTGGAGCTCA TTTCGCAAGA GACCCCAACA ATCCGAGCTT AAACTAGTGT GAACAACTCG
  AACACTTCTC GGCTTCTATG CAGCTGCCTG TATTGAACTT GGAGGGTCTG CACCATGCAG
  AGCAATATAA AATGCAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50450338	NES13440888	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36399778					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450338	NES13440888	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66590433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	832 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	1242 bp upstream
Rr405709	regulatory region 405709	1057 bp upstream
Rr539737	regulatory region 539737	681 bp proximal
Rr539738	regulatory region 539738	1029 bp proximal
Rr539739	regulatory region 539739	1083 bp proximal
Rr539740	regulatory region 539740	1242 bp proximal
Tssr151705	transcription start site region 151705	1225 bp upstream