rs36399953 SNP Detail

Summary

• ID
  rs36399953
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95972318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGGGAGT CAAGGAGCCT
  AGGCAGACCA GGTGGCACAG GCCTGTGAGC CCTGCTCCTT AGGAGGCTGA GGCAGATGGA
  GACGGAGATG GTGGTGCTCA CCTGGACTAC AACAGGAATG GCAGCCTGGC CAATGGAGCA
  GGATCCTGCC CCAAATACAA ATCAAATATG ACAAACTTAA AAGCTTGAGG CTAGGCTCCG
  K
  GATAGAGCAT CCACCTAGTG TGTGCAAGAC GCTGGGTACT AAAGAAAGAA AACAAAAATA
  TCCCCAAACC TAATGTATTT AGCTCCTTAT AGGGGCAGAT GACAGGCGAA GGAGGACTTG
  TGACACTTTC CTGAGCATAC AGTTTTGTGC TTCAGGAGTA CTGTTAACAT TTTATATTCT
  CAAAAATTAA AACAAATCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51973416	NES14990769	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G		G	T	G	T
ss145641435	ENSMUSSNP5839715	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36399953					SNP	T	T	T	T	T	T	G	T	T	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51973416	NES14990769	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95972318 () rs orientation: forward

Symbol	Name	Function Class
Cngb1	cyclic nucleotide gated channel beta 1	within coordinates
Rr368590	regulatory region 368590	169 bp downstream
Rr368591	regulatory region 368591	1733 bp upstream
Rr668196	regulatory region 668196	1466 bp distal
Rr668197	regulatory region 668197	within coordinates
Rr668198	regulatory region 668198	1711 bp proximal