rs36401395 SNP Detail

Summary

• ID
  rs36401395
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACCCACG AGGGGATGGG
  GAACTGAAAA CAGCAGTCCT ACAAGTCATC AACTCTGTGT GACGTTGGGT TTCCTGCAGT
  GCTACCTGTC TTGAGCAGTT CTGTGCCCTG ACACAAAGCA AATCCGGTGC TCTGTGTAAG
  TGAACGCAGT GGGACCACCG CGCTGACTCA TGATCTGCGG GCTCTCTTTG GGAGCCCTGG
  R
  AGTGTCTCAG GGAGGAAAAT GATCCCCAAA CCCACCTCTC AGGTTCTGGT TCTGCTTGCT
  CAGACGAATC TGAGTTCACT GAGTCTGCTG GAGCTTTCCT AAAGCTCCAC TAGCCAGTAA
  CTAACTATGT TGCCAATACT CCAATCTCCA CTTTCCAGGC ACGCAGCCAG GTGGCAGTGA
  AGAGCTACAA GGGTCTTCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50674826	NES14008195	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36401395					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674826	NES14008195	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	289 bp distal
Gm48081	predicted gene, 48081	within coordinates
Rr676656	regulatory region 676656	473 bp distal
Rr676657	regulatory region 676657	368 bp distal
Rr676658	regulatory region 676658	149 bp distal
Rr676659	regulatory region 676659	within coordinates
Rr676660	regulatory region 676660	160 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	463 bp upstream
Tssr88821	transcription start site region 88821	512 bp upstream
Tssr88822	transcription start site region 88822	484 bp upstream
Tssr88823	transcription start site region 88823	457 bp upstream
Tssr88824	transcription start site region 88824	434 bp upstream
Tssr88825	transcription start site region 88825	415 bp upstream
Tssr88826	transcription start site region 88826	323 bp upstream
Tssr88827	transcription start site region 88827	241 bp upstream
Tssr88828	transcription start site region 88828	211 bp upstream
Tssr88829	transcription start site region 88829	193 bp upstream
Tssr88830	transcription start site region 88830	165 bp upstream
Tssr88831	transcription start site region 88831	132 bp upstream