rs36402379 SNP Detail

Summary

• ID
  rs36402379
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123829194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAGGAAC CAGCGAGAAT
  AACCAACCCG ACGGCTAGAA AGGCGATGGT CCGCCGGCGG GCGGGTTCGC GTGACGTCAC
  TTCCCTTTCG CCTGATTTTG ATTGGCGTTT GAGATTGGCC GGACTCCCTA CAAGCCCAGG
  GTGCTTTGCG GTGCCCGGTC CTTTCCGCTC GGCCGTTCTC CTGTATAGGA GGTGAGTCTC
  W
  GCCGCCGCCG GTCCCATCGT GGTCCATCGG GCTCCATCGC CCTCCATCCG CTGTCATCGG
  CGAAGAGAGG CCGCACGGAC AGCCATGGAG GAGCCCGGGC GCCGACAGCA CGGAGCCAGG
  GCAGGGGCGG GAGGACCCGG GACGGGGTTG GGGACCCTGG CCTTGACTCG CCGCCCTCCT
  CTCCCTCGCG GCCTTAGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50631639	NES14029296	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36402379					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50631639	NES14029296	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123829194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	within coordinates
Rpl13	ribosomal protein L13	within coordinates
Rr382749	regulatory region 382749	1440 bp downstream
Rr672353	regulatory region 672353	1759 bp distal
Rr672354	regulatory region 672354	993 bp distal
Rr672355	regulatory region 672355	95 bp distal
Snord68	small nucleolar RNA, C/D box 68	603 bp upstream
Tssr79911	transcription start site region 79911	104 bp downstream
Tssr79912	transcription start site region 79912	35 bp downstream
Tssr79913	transcription start site region 79913	1 bp downstream
Tssr83335	transcription start site region 83335	175 bp upstream