rs36404294 SNP Detail

Summary

• ID
  rs36404294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:45479072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGTCAAG GTCTTTGCGA
  GTGACGCTGA TGAGGGATCG AATGCTGACG TCACCTACGC CATTGAGGCG GATTCTGAAA
  GTGTCAAGGA GAACTTGGAA ATCAACAAGC TGACTGGCCT GATTACTACA AAGGAAAGTT
  TAATAGGTTT AGAGAATGAG TTCTTCACTT TCTTCGTTAG AGCCGTGGAT AGCGGGTCTC
  Y
  GCCCAGAGAG TCTGTCGTTC CTGTCTATAT TAAAATACTT CCACCAGAAG TGCAGCTTCC
  TAGGTTCTCA GAGCCCTTTT ATACCTATAC CATCTCAGAA GACACGCCCA TTGGAACAGA
  AATTGACCTC ATCCGGGTAG AACATGGCGG GGCTGTTCTT TACATCCTTG TCAAAGGCAA
  TACTCCTGAG AGTAATCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51951850	NES14977673	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36404294					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51951850	NES14977673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:45479072 () rs orientation: forward

Symbol	Name	Function Class
Fat1	FAT atypical cadherin 1	within coordinates
Tssr81148	transcription start site region 81148	1266 bp upstream