rs36405857 SNP Detail

Summary

• ID
  rs36405857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45312579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGGAAG TGGGTGTGTG
  GGTGGGTACG GGCATGAGTG TGTGCCTGAG TGTGGGGTGA GTGTATGCAT GGGTGTGGCA
  CTATGGGGTG TTAGAGGAGT CTGAAGGCAA GGCTACTGAG TGCTTAGTGC CTCTCTAGAG
  CATACTAGAC CTAGTTACCT ACTACATGCA GACAGGAGAG GAGGTGACCT TAGGAAGCTC
  R
  GAGGCAGAGT CACTGGCAAA TTGTTGCCAC CTCTGTGGGC TATGTGAACA TTTAGAAAGG
  ACACTTAGGA GCGTCTCTAA GTGAAGCCCA GGAGGAAAAA CCTGAGGTCA GAGGGAACAT
  TTTGGGAACT CAAAACCCAT CTTTGCTAAG ATCCTGAGGC AGGAGTGAGC CCTGTAAGGT
  CAGAGAGCCA CTAAGGGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52013382	NES15030378	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36405857					SNP	A	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013382	NES15030378	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45312579 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	622 bp proximal
Rr200381	regulatory region 200381	422 bp proximal
Tssr84781	transcription start site region 84781	1612 bp downstream
Tssr84782	transcription start site region 84782	1563 bp downstream
Tssr84783	transcription start site region 84783	1284 bp upstream
Tssr84784	transcription start site region 84784	1334 bp upstream
Tssr84785	transcription start site region 84785	1861 bp upstream
Tssr84786	transcription start site region 84786	1893 bp upstream
Tssr84787	transcription start site region 84787	1915 bp upstream
Tssr84788	transcription start site region 84788	1946 bp upstream
Tssr84789	transcription start site region 84789	1972 bp upstream