rs36406899 SNP Detail

Summary

• ID
  rs36406899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61004195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCCGAG TGCTCCTCGG
  TGGGCTGAAG GTCAGGGAAA GGATAGACAG AGTCCTCATC TGCTCCATGC CTGGTCTAAA
  CTCACAGATA ACGAAGCTGG TAACTTGCCG CATCCTCTGC ACCAAAAGCT GAAGTCCGGG
  GTTCCTGGAA GAGAAGAGTA ATTGTCAGGT CCGAAAGGAA CCTCGGTTTC CCAAAAAAGC
  Y
  GTGGGTAACC CCGAGATGGC AGCGTTTGCT CAGCTACATT TGCTCAGCTC AGGCTGAACT
  ATAGACAGAG CAGTGTTCCT CAGGAACCCA TGAAAGGGGC TTCTATCTGG TGGAAAGGGC
  CCCGTCCCTC AGCATGTATT TGTGGTTGTG TATCCTTCAG TTCCACTCCG CATGTACCTG
  ACACATTTCA AGACCCACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51523325	NES14633419	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36406899					SNP	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51523325	NES14633419	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61004195 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf9	C1q and tumor necrosis factor related protein 9	1388 bp upstream
Gm34997	predicted gene, 34997	within coordinates
Rr389738	regulatory region 389738	953 bp downstream
Tssr125961	transcription start site region 125961	1335 bp upstream
Tssr125962	transcription start site region 125962	1352 bp upstream
Tssr125963	transcription start site region 125963	1374 bp upstream