rs36407316 SNP Detail

Summary

• ID
  rs36407316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70705215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGCAGG CCTCCCTGAG
  TCCTCGGGCA TCTCCCAGAG TCCTCCCTGC CTCTCGGGCC AATGCCCATG TATAGCCTGG
  CCTCCATATA GATGCAGAAA GCTGTGGGGT ACCTCCTTCC TAGCCCCACC CACCCCACTC
  AGGGCTACCC CAGACAGCCC CCTTCTCACT CAGCTGGGCC TGAGGGCTTT GCCTCCTCCG
  Y
  GCCAGTGCCA GGCTCCTCTC TCTATAAATA ACCTCCTGCA CTGCTGTCTT GCCCTGGCTG
  CCCCTGATCC CCCCAGAGCC CAATTCCCGC ATGGGAGAAC CGTCCATCCC TCCTGTCACT
  GTCGTTGACC CACTTGAGAT GCCCTCCCAC TCTCTGGAAA AGTACCCTCT CTCGTTTTCT
  AGTTTGGAGG GCTCGCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51530281	NES14627574	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36407316					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51530281	NES14627574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70705215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	490 bp distal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	215 bp distal
Tssr4470	transcription start site region 4470	1154 bp downstream
Tssr126423	transcription start site region 126423	1308 bp downstream
Tssr126424	transcription start site region 126424	1234 bp downstream
Tssr126425	transcription start site region 126425	1178 bp downstream
Tssr126426	transcription start site region 126426	1042 bp downstream
Tssr126427	transcription start site region 126427	927 bp downstream
Tssr126428	transcription start site region 126428	915 bp downstream
Tssr126429	transcription start site region 126429	156 bp downstream
Tssr126430	transcription start site region 126430	88 bp downstream
Tssr126431	transcription start site region 126431	60 bp upstream
Tssr126432	transcription start site region 126432	94 bp upstream