rs36407522 SNP Detail

Summary

• ID
  rs36407522
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44383668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTAAGAG GCACCTTGGC
  TGGAGCCACC AGCAGATGGT GGCTTTGCTA ACCTTTCACA CCACCTCACT GGAGCTACAG
  TTTCAGAGAC TACACCCAGA GATTAGCAGC CCCAGTGCCA ACTGCCGTCT ATAACATGTT
  TGACAATGAT AACGAGGACG ACAATACAAT CGAATACACT CGAATTACTT CCCACCAAAT
  W
  TGATCACTTA CTAAAAAAAA AAAAATTCCA AAATGTAGCC TGTAAAAGAT TTCTGCAAAC
  CAATGTACTG ATGACTCTCC AGCCAGCCTC TTGACTATTC CCACTCGATC TAAGGGGTCT
  CCGGGCTAAG GGAAGGAGTG AGACTGAGCT CACAGGCACT ACAGATTAGG AAAGAGATAA
  GGCACCCAAA GCTATTAGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50801828	NES13525188	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36407522					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50801828	NES13525188	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44383668 () rs orientation: forward

Symbol	Name	Function Class
D19Mit67	DNA segment, Chr 19, Massachusetts Institute of Technology 67	1926 bp proximal
D19Mit67.2	DNA segment, Chr 19, Massachusetts Institute of Technology 67.2	1776 bp proximal
D19Nds1	DNA segment, Chr 19, Nuffield Department of Surgery 1	1884 bp proximal
Rr548236	regulatory region 548236	761 bp distal
Rr548237	regulatory region 548237	within coordinates
Rr548238	regulatory region 548238	1640 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	within coordinates
Tssr5524	transcription start site region 5524	1130 bp downstream
Tssr156606	transcription start site region 156606	1179 bp upstream
Tssr156607	transcription start site region 156607	1503 bp upstream
Tssr156608	transcription start site region 156608	1912 bp upstream
Tssr159446	transcription start site region 159446	636 bp upstream
Tssr159447	transcription start site region 159447	461 bp upstream
Tssr159448	transcription start site region 159448	435 bp upstream
Tssr159449	transcription start site region 159449	372 bp upstream
Tssr159450	transcription start site region 159450	358 bp upstream
Tssr159451	transcription start site region 159451	278 bp upstream
Tssr159452	transcription start site region 159452	3 bp downstream
Tssr159453	transcription start site region 159453	62 bp downstream
Tssr159454	transcription start site region 159454	94 bp downstream
Tssr159455	transcription start site region 159455	387 bp downstream
Tssr159456	transcription start site region 159456	509 bp downstream
Tssr159457	transcription start site region 159457	553 bp downstream
Tssr159458	transcription start site region 159458	583 bp downstream
Tssr159459	transcription start site region 159459	673 bp downstream
Tssr159460	transcription start site region 159460	710 bp downstream
Tssr159461	transcription start site region 159461	769 bp downstream
Tssr159462	transcription start site region 159462	797 bp downstream
Tssr159463	transcription start site region 159463	843 bp downstream
Tssr159464	transcription start site region 159464	866 bp downstream
Tssr159465	transcription start site region 159465	890 bp downstream
Tssr159466	transcription start site region 159466	911 bp downstream
Tssr159467	transcription start site region 159467	964 bp downstream
Tssr159468	transcription start site region 159468	1212 bp downstream
Tssr159469	transcription start site region 159469	1282 bp downstream
Tssr159470	transcription start site region 159470	1299 bp downstream
Tssr159471	transcription start site region 159471	1316 bp downstream
Tssr159472	transcription start site region 159472	1352 bp downstream
Tssr159473	transcription start site region 159473	1371 bp downstream
Tssr159474	transcription start site region 159474	1396 bp downstream
Tssr159475	transcription start site region 159475	1441 bp downstream
Tssr159476	transcription start site region 159476	1459 bp downstream
Tssr159477	transcription start site region 159477	1479 bp downstream
Tssr159478	transcription start site region 159478	1489 bp downstream
Tssr159479	transcription start site region 159479	1513 bp downstream
Tssr159480	transcription start site region 159480	1541 bp downstream
Tssr159481	transcription start site region 159481	1590 bp downstream
Tssr159482	transcription start site region 159482	1690 bp downstream
Tssr159483	transcription start site region 159483	1781 bp downstream
Tssr159484	transcription start site region 159484	1815 bp downstream
Tssr159485	transcription start site region 159485	1941 bp downstream
Tssr159486	transcription start site region 159486	1948 bp downstream