rs36409022 SNP Detail

Summary

• ID
  rs36409022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11797174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCTCC TTGCTGTCAA
  GAGCCCTGGG ATTTGAAGAA TTTTTAGAAA AGTGTGGTTC TTCTCACTGC CCTTCCTCTT
  CAACGGTGCC CCTATTCCCT TCCCCTCCGT ATTTGATTTG GGGATAACAA ATGGCGTATC
  GACCAGAGTA GTGGTCAACA ATTGGCGCTA GTGAAGACTT GGTCTCAAGT TCGAGAAGTA
  Y
  CCTCGACTTT GTGTTCAATC TTAAAGGCCA TAGATACTTT CTAATTATAA CCGGACTTTA
  CCCTCTGCGA TGTGCACGCT CCTACTGACT TCCTCCGCTG CCATAAAGGT AGTCAAGTAA
  GGCAGGGCTT GAGCTGTTAG AGCCAACTAT GCGGTAATCA ACTCTAATCC TCTATCTGAC
  CTCCGGCTCC TGTCCTGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50615998	NES13627378	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36409022					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50615998	NES13627378	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11797174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10634	CpG island 10634			414 bp distal
Cpgi10635	CpG island 10635			within coordinates
Gm41810	predicted gene, 41810			within coordinates
Gm59062	predicted gene, 59062			within coordinates
Rr544382	regulatory region 544382			1576 bp distal
Rr544383	regulatory region 544383			1100 bp distal
Rr544384	regulatory region 544384			378 bp distal
Rr544385	regulatory region 544385			227 bp proximal
Rr544386	regulatory region 544386			623 bp proximal
Rr544387	regulatory region 544387			645 bp proximal
Stx3	syntaxin 3			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr155283	transcription start site region 155283			1706 bp downstream
Tssr155284	transcription start site region 155284			1695 bp downstream
Tssr155285	transcription start site region 155285			1234 bp downstream
Tssr155286	transcription start site region 155286			768 bp downstream
Tssr155287	transcription start site region 155287			1671 bp upstream
Tssr158398	transcription start site region 158398			1368 bp upstream
Tssr158399	transcription start site region 158399			927 bp upstream
Tssr158400	transcription start site region 158400			845 bp upstream