rs36409721 SNP Detail

Summary

• ID
  rs36409721
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36347824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAACTAGG GGCACAACCA
  CACCACCGAT CTGTGGCCCT TTGCACTCAC TACCCAGGCG TTGCTCCCTG GCCGGGGTCA
  CATCCCACAC CTAACCCACA GGCACAGTGG GGCCAACCGT AGGCCGGGAA GGCCTCAAAT
  TAATCCCAAA TTGTGCTGCT CAGGCTGTAT CCCCTAGTTT GCAGAGTCTT TCATTTCAGA
  W
  GAGTGTAACA GGTGCTCCTT GCCCCGCCCC GCGGGCACTG CTGGGAATTG ATGCAAATCT
  AAGGATCTCA GTGTCTAAAG AGGATGGATG CCTGGGCAGG GGAGGGTGAG GAATGTTAAG
  CTAGAGGGTC TGTCTCTACA GCAGTTAGTG TCCTAAATGA CTGCTTGGCC TAGAACTTGA
  AGTGACAGAG GCAGAATGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51238015	NES14282250	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36409721					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238015	NES14282250	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36347824 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Cpgi139	CpG island 139	174 bp distal
Gm70585	predicted gene, 70585	1119 bp upstream
Rr366864	regulatory region 366864	577 bp downstream
Rr395991	regulatory region 395991	910 bp downstream
Rr409283	regulatory region 409283	1130 bp distal
Rr409284	regulatory region 409284	964 bp distal
Rr409285	regulatory region 409285	within coordinates
Tssr6253	transcription start site region 6253	1008 bp downstream
Tssr6254	transcription start site region 6254	980 bp downstream
Tssr6255	transcription start site region 6255	964 bp downstream
Tssr6256	transcription start site region 6256	668 bp downstream
Tssr6257	transcription start site region 6257	594 bp downstream
Tssr6258	transcription start site region 6258	462 bp downstream
Tssr11252	transcription start site region 11252	876 bp downstream