rs36409771 SNP Detail

Summary

• ID
  rs36409771
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27858027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCTCAC ATCCTCAGTG
  CAAGGCCAGA GGCAATAGAT GCCCCCCCCA ACTACACACC TATTTCCAAA TTATTGGATA
  ACAACAAGTC CCCTCAGATG CCCCGTGCCA AAGCAATGGT CCTTAGCACT TTAGTAAAGA
  GCCTTTTCTC CTTCAGTTTC CTATTAATAC CTAGACCCAG AGTCCCATCA GCTACCCAAA
  R
  GAACTGAAAG AGTCCCAGTT TGACTGTGGA CACCATCACT AGCTCAAACA GTAGGCTAGG
  TCATGCACTC TGTGCTCTCT GAGCTTACCC TGGTGGCCCT CAAGGTCTCT GCACCAGCCG
  GATTTCCAAC TGAAATCAAA CTTCACCCCA AACCTGATTC TCCTTTCCTG CCCCAGTTAT
  TATCTGATGG TAGCCACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887362	NES14907204	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36409771					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887362	NES14907204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27858027 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr170293	regulatory region 170293	550 bp proximal
Tssr2161	transcription start site region 2161	1576 bp downstream
Tssr65423	transcription start site region 65423	1873 bp downstream
Tssr65424	transcription start site region 65424	1868 bp downstream
Tssr65425	transcription start site region 65425	1528 bp downstream
Tssr65426	transcription start site region 65426	1067 bp downstream
Tssr65427	transcription start site region 65427	1038 bp downstream
Tssr65428	transcription start site region 65428	1021 bp downstream
Tssr65429	transcription start site region 65429	1008 bp downstream
Tssr65430	transcription start site region 65430	962 bp downstream
Tssr65431	transcription start site region 65431	948 bp downstream
Tssr65432	transcription start site region 65432	925 bp downstream
Tssr65433	transcription start site region 65433	813 bp downstream
Tssr65434	transcription start site region 65434	753 bp downstream
Tssr65435	transcription start site region 65435	606 bp downstream
Tssr65436	transcription start site region 65436	824 bp upstream
Tssr65437	transcription start site region 65437	878 bp upstream