rs36409918 SNP Detail

Summary

• ID
  rs36409918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48591271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTCAGAT TCAAGCCAGA
  CTGGATACTT GGTACCAAAT GTTTCCTATG TCCAGATTTC AGTGCAGGTC AGGGGACAGT
  CCTGTAAATC AATTCAACTC ATTAGACTTG GGCATTCAAG TCCTGACAAT ATATAATTGA
  AGTCACTACT TTCCTCCTAA AGCATGGCTC TATTAAAATG AATTCTCATG AGCAAGCACA
  R
  GGAAGACCAA AATTTATTTG GAACTGACAT TTATTAACAT TATGCACCAG GAATCTATCA
  TAAATATTTT CCCCTGAAAT AAAATGTCTT AGTTACTTTT CTGTTTCTGT GATAAAACAC
  CATGACCGAG GCAACTTATA AGAAGCATTT AATTTGGCTT ATGGTTTCAG AGGATTTGAG
  TCCATAATGG TGGAGTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51306555	NES13769696	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36409918					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51306555	NES13769696	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48591271 () rs orientation: forward

Symbol	Name	Function Class
Gm38804	predicted gene, 38804	within coordinates
Gm44965	predicted gene 44965	within coordinates
Gm45021	predicted gene 45021	1087 bp downstream
Gm67224	predicted gene, 67224	531 bp upstream
Rr135555	regulatory region 135555	471 bp distal
Tssr60741	transcription start site region 60741	596 bp upstream
Tssr60742	transcription start site region 60742	555 bp upstream
Zfp775	zinc finger protein 775	within coordinates