rs36410229 SNP Detail

Summary

• ID
  rs36410229
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27774954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTATGTG GGCTTGGTCA
  CAGTCTATGC CTACAGCCAT TCTGTGTCGC TGGTTCGTGG GGAAATTGGC TTCGTTCGGG
  TAAGTGTTCA AAGTTTAACA CCCATGAGCA GTCAAAAAAT AAGAGCCAAA TCCCTGGTGT
  TAGACCCCTC AAACTCAAGG CCTTTTTTAT AGGTGAGGTG GTAGGGAACT GGTGAGATTT
  K
  AAAGCCAGTA GCAGATCTTT AAAACCTTTC CCTCACAAAT GCCACTTCTA GAAATGTTAA
  GGATGTGGTT AGAGAGAAAA AAAAATATCT GATGCTATTT GGAAAAGCAA AAAGGAATTT
  TTAAAAAGAA AGTGACAAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51887655	NES14908397	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G		G	G	T	G
ss322125240	CHEV_7_28860548	CHEVERUD	SCREENING_POP	f	SNP						T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs36410229					SNP	T	T	T	T	G	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887655	NES14908397	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27774954 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	within coordinates
Tssr65346	transcription start site region 65346	341 bp downstream
Tssr65347	transcription start site region 65347	314 bp downstream
Tssr65348	transcription start site region 65348	287 bp downstream
Tssr65349	transcription start site region 65349	227 bp downstream
Tssr65350	transcription start site region 65350	201 bp downstream
Tssr65351	transcription start site region 65351	179 bp downstream