rs36410405 SNP Detail

Summary

• ID
  rs36410405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18001277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCATAC TAATTTCTAG
  AATTCAAATG TTCACTGTTG AACCAAATTA GAACATGTTC AAACTTCAAG TGATGATACA
  ACTACACTGA ACATCTCATA GTTTGCTATT CCTTATCCTC CTTATTCTAC AGTAAATACA
  AACACAACAA GGAGGACTCT GAGGTCTGTG CTTTTCCATT GTTACTGTTA CACAATAACA
  R
  CTTATTTTAT TCACTGTTTT CTAGAAGGAG GGGAGCTACA ACAATGGCAG ATGATTAGAA
  AACTTGTTAT ATACTGGGGC TTTTTTTCTT TCTACCTAAC CACCAAACCA ATATGGTATA
  AAGAAAGAAG GAAAGTAGGG AAAAATAAAA ACACGTAAAA TCACAACAAA ATGCACTACC
  ACTAAAGATT ATGTTCCGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51687581	NES14753941	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36410405					SNP	A	A	A	A	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51687581	NES14753941	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18001277 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Rr121714	regulatory region 121714	1836 bp distal
Tssr50146	transcription start site region 50146	804 bp upstream
Tssr50147	transcription start site region 50147	697 bp upstream
Tssr50148	transcription start site region 50148	671 bp upstream
Tssr50149	transcription start site region 50149	623 bp upstream
Tssr50150	transcription start site region 50150	597 bp upstream
Tssr50151	transcription start site region 50151	578 bp upstream
Tssr50152	transcription start site region 50152	708 bp downstream
Tssr50153	transcription start site region 50153	735 bp downstream
Tssr50154	transcription start site region 50154	792 bp downstream