rs36411196 SNP Detail

Summary

• ID
  rs36411196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:44691668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGAAACTA AAACATATAA TAATAACTTA
  TTTGAGATGT ACTTCACTTT AAACCAGAAA CCTCCAGTGG GAGGtttttt tttttttttt
  ttttttACAT AACTGAAGTA TGTATTCATC TACTTGAAAT AAATAGTGAA CTATTTTTTA
  Y
  CATTTTAATT TACATTTGTT AGGATTGTGG TGTGTAGGCA TGCtgtgtgt aggtgtacat
  gctagtgctc atatatggcg atcagaaaac aatctgcggt gttttctccc acctttacgt
  gggttccaga aatcaaactc agatctctag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss50949653	NES13945456	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C		T	T	T
ss319707559	CHEV_1_44709353	CHEVERUD	SCREENING_POP	f	SNP							C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs36411196					SNP	T	C	T	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50949653	NES13945456	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44691668 () rs orientation: forward

Symbol	Name	Function Class
Gulp1	GULP, engulfment adaptor PTB domain containing 1	within coordinates
Tssr6574	transcription start site region 6574	52 bp downstream