rs36411701 SNP Detail

Summary

• ID
  rs36411701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40642450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGATCT TTGCCTTGCA
  GATCTATAAA ACTGCGGCCA TGGCAGGGCA GCTCCGGGAG GGAGGCTGCA GGCTGCAGGA
  GGCACGGGAA TTCGGGCTGC TGCAATTTGA GTCTCCAGGG ATAGGAAGGC CCGCGCCCTC
  TCTGCAGATT CTTGCCAAAT CAAACACCCA GCAGATGACC GGAGCGGGAC CCTGGAGAGA
  Y
  CGCTGGTTCT TAGCAGATGG CCATCTCCCC AGCCTGTCTC TTACTCGGAA TCTTTCCCGG
  TTCCTTCTTC TGTGTGGGGC ACAATTTTGT GAGCTACAGA AATTGAGCTT TCTAATTTGA
  TTTTCTAGAG AAGGATTTGA ATAGAAACGC ACATGGGACT CAGGAAGGTG GGCACAGACG
  GTTGACTTAC TTGGTTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss52005484	NES15020107	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs36411701					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52005484	NES15020107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40642450 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	49 bp distal
Gm68229	predicted gene, 68229	within coordinates
Gm68234	predicted gene, 68234	within coordinates
Rr1916	regulatory region 1916	within coordinates
Rr676903	regulatory region 676903	197 bp distal
Rr676904	regulatory region 676904	within coordinates
Rr676905	regulatory region 676905	438 bp proximal
Rr676906	regulatory region 676906	1199 bp proximal
Tssr84462	transcription start site region 84462	176 bp downstream
Tssr84463	transcription start site region 84463	140 bp downstream